miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Rattus norvegicus



ABOUT THIS RECORD

ID: MNEST005654
species: Rattus norvegicus
miRNA family: miR-2305
source: miRNEST

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGGGGGGGCGGGGAGGGGGG

miRNA*
CGGCCTCCGGGCCTCCACCCAGC

mismatches: 4
bulges: 2

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pre-miRNA
ATTCATTGCAAAGGGGGGGGCGGGGAGGGGGGGACTCAGTTGCAGTAGTTCTCCAGTTGGTAGAGGGAGCAAATGCTGGTGCAGCACTGATCCACAATGC
CACGCTTTTTGCCGGGCAACCTCCAGTGCCAAGGTCTGAAGATCCCCGGCCTCCGGGCCTCCACCCAGCTCCAGTTG


dot-bracket secondary structure
.......((...(((((((((..(((((.(((((.((((.((((.((((.((((..(.....)..)))).....)))).))))((((((........(((
(..((.....))..)))).....))))))......))))...)))))..)))))..)))))).))).))........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P01322|INS1_RAT: 1e-16

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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